RnoEX6042537 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60256712-60260086:-
Coord C1 exon
chr14:60259970-60260086
Coord A exon
chr14:60259754-60259878
Coord C2 exon
chr14:60256712-60259213
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTTCTATGCTTTCTCAACAGGTA
3' ss Score
11.21
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATTTCCCCTTTCCCTTTGCCTGGCTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATAGTGCAAAGCAGCTCTGTGTTCACTTCTGCCATGACGCCACTCATCG
Seq A exon
GTATTGGGGTGATCAGCATCGAGAGGGCATATCCACTCACGCTGGGCTCCAACATTGGCACCACCACGACTGCCATTCTGGCTGCCTTGGCCAGCCCAGGCAACACATTGAGGAGTTCCCTCCAG
Seq C2 exon
ATTGCCCTGTGCCATTTTTTCTTCAACATCTCTGGAATATTGCTGTGGTACCCAATCCCATTCACCCGTCTGCCCATCCGTCTGGCTAAAGGCCTGGGCAACATCTCTGCCAAGTATCGCTGGTTCGCAGTCTTCTATCTCATCTTCTTCTTCCTCCTGACCCCGCTGACAGTGTTTGGCCTGTCCCTGGCTGGCTGGCCAGTGCTGGTGGGCGTGGGTGTGCCCATCATTCTGCTGATCCTCCTGGTCCTGTGCCTCCGGATGCTGCAGGCCCGCTGCCCTCGCATCCTGCCCCTGAAGCTCCGGGACTGGAATTTCCTACCCTTGTGGATGCACTCTCTGAAACCCTGGGACAACATCATCTCCCTGGCCACCTCCTGCTTCCAGAGGCGCTGTTGCTGCTGTTGCCGTGTGTGCTGCCGTGTCTGCTGCATGGTGTGTGGCTGCAAGTGCTGCCGCTGCAGCAAGTGCTGCAAGAACCTGGAGGAGGAGGAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626-'10-16,'10-15,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
A:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=15.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCCTTTCCCTTTGCCTG
R:
ACTGCGAACCAGCGATACTTG
Band lengths:
247-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]