Special

MmuEX6017685 @ mm9

Exon Skipping

Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53459368-53462903:+
Coord C1 exon
chr5:53459368-53459484
Coord A exon
chr5:53459583-53459707
Coord C2 exon
chr5:53460234-53462903
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTTCTATGCTTTCCCAACAGGTA
3' ss Score
11.46
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATTTCCCCTTTCCCTTTGCTTGGCTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATCGTGCAAAGCAGCTCTGTGTTCACGTCTGCCATGACTCCACTCATCG
Seq A exon
GTATTGGGGTGATCAGCATTGAGAGGGCATATCCACTCACGTTGGGCTCCAACATTGGCACCACCACCACCGCCATTCTGGCTGCTTTAGCCAGCCCAGGCAACACCTTGAGGAGTTCTCTCCAG
Seq C2 exon
ATTGCCCTGTGCCATTTCTTCTTCAACATCTCTGGAATATTGCTTTGGTACCCAATCCCATTCACCCGTCTGCCCATCCGTCTGGCTAAAGGCCTAGGCAACATCTCTGCCAAGTATCGCTGGTTCGCAGTCTTCTATCTCATCTTCTTCTTCTTTGTGACCCCGCTGACAGTGTTTGGCCTGTCTCTGGCAGGCTGGCCAGTGCTGGTGGGCGTGGGCGTACCCATCATCCTGCTGCTGCTCCTGGTTCTGTGCCTCCGGATGCTGCAGTTCCGCTGCCCTCGCATCTTGCCCCTGAAGCTCCGGGACTGGAATTTCCTACCCTTGTGGATGCACTCTCTGAAACCCTGGGACAACGTCATCTCCCTGGCCACCACCTGCTTCCAGAGGCGTTGCTGCTGCTGTTGCCGCGTGTGCTGCCGTGTCTGCTGCATGGTGTGCGGCTGCAAGTGCTGTCGCTGCAGCAAGTGCTGCAGGGACCAGGGAGAGGAAGAGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'14-13,'14-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.005
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0269010=Na_Pi_cotrans=FE(27.9=100)

							
A:
PF0269010=Na_Pi_cotrans=FE(29.3=100)

							
C2:
PF0269010=Na_Pi_cotrans=PD(22.1=14.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000092380





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000132328
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:25674505-25674629 
HIGH PSI
HsaEX6083850
(SLC34A2)
Human
(hg19)
chr4:25676127-25676251 
HIGH PSI
HsaEX6083850
(SLC34A2)
Rat
(rn6)
chr14:60259754-60259878 
HIGH PSI
RnoEX6042537
(Slc34a2)
Cow
(bosTau6)
chr6:46747144-46747268 
HIGH PSI
BtaEX0033083
(SLC34A2)
Chicken
(galGal4)
chr4:73039894-73040018 
HIGH PSI
GgaEX1053293
(SLC34A2)
Chicken
(galGal3)
chr4:75886082-75886206 
HIGH PSI
GgaEX1053293
(Q6TQF9_CHICK)
Zebrafish
(danRer10)
chr23:1089847-1089971 
HIGH PSI
DreEX6078627
(slc34a2b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTTTCCCTTTGCTTGGCTGA

				
R: 
ACTGCGAACCAGCGATACTTG

				
Band lengths: 
242-367

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










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