RnoEX6016653 @ rn6
Exon Skipping
Gene
ENSRNOG00000025498 | Crb2
Description
crumbs 2, cell polarity complex component [Source:RGD Symbol;Acc:1309368]
Coordinates
chr3:22056583-22058871:+
Coord C1 exon
chr3:22056583-22056699
Coord A exon
chr3:22057422-22057548
Coord C2 exon
chr3:22058647-22058871
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAGCCACTGTCTCTTCCAGATG
3' ss Score
9.21
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTGCCTACCTTGCCTCAGGGGTGTAGCCTCAACTCCACCTGCAAGGATGGTGCCCCTTGTGGGGGTGGCCCCTTAGGCACTAACTGCAGTTGCCAGGAAGGCCTTGCTGGCCTCAG
Seq A exon
ATGTCAGAGTCTTGACCAACCCTGTGAAGCCAGTCCTTGCTTGAATGGGGGCACCTGCCGGGTGACCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGTG
Seq C2 exon
AAAACCCTGCCTCTGCCTCTGCCATTCCCACTGCTGGAGGTAGCAGTGCCTGCAGCCTGTGCCTGCCTCCTCCTCCTCCTCCTGGGCCTCCTCTCAGGAATTCTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTAGCTGGGGCTCGTCTGGAGATGGACAGTGTCCTCAAGGTGCCACCAGAGGAGAGACTTATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025498-'16-13,'16-12,17-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCCACCTGCAAGGATGG
R:
CCTGCTGACTTGGGCTGTAAG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]