MmuEX0012665 @ mm10
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs family member 2 [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37794530-37799103:+
Coord C1 exon
chr2:37794530-37794646
Coord A exon
chr2:37795375-37795498
Coord C2 exon
chr2:37796448-37799103
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCAGCCGTTGTCTCTTCCAGATG
3' ss Score
10.76
5' ss Seq
GTGGTGGTG
5' ss Score
-7.58
Exon sequences
Seq C1 exon
GTTGCCTGTCCTGCCTCAGGGATGCAACCTCAACTCCACATGCAAGGATGGCGCCCCTTGTGAAGGCGGCCCCTTAGGCACCAACTGCAGTTGCCAGGAAGGTCTTGCTGGCCTCAG
Seq A exon
ATGTCAGAGTCTCGACAAACCCTGTGAAGCCAGCCCTTGCTTGAATGGGGGCACTTGCCGGGTGGCCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTG
Seq C2 exon
AAAACCCTACCTCTGCCTCTGCCGTTCCCACTGCTGGAGGTAGCAGTGCCTGCAGCCTGTGCCTGCCTCCTCCTTCTCCTCCTGGGCCTCCTCTCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTGGCTGGGGCTCGTCTGGAGATGGACAGTGTCCTCAAGGTGCCACCAGAGGAGAGACTTATTTAGGTTTGCCTGGCTGCTGGTGCCATGTCCTGAAGGTCCTAAAGGGTCACCACAGGACTTCTACCTGGAGACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCATGGTTGGCAGCCCTTGCTCTGTCCATCATGGACTCAGGAAATGGGGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTGTGTACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATGACAGGGTGTGTGCATGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403-'20-19,'20-18,21-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGATGCAACCTCAACTCC
R:
CCTGCTGACTTGGGCTGTAAG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types