HsaEX0017142 @ hg19
Exon Skipping
Gene
ENSG00000148204 | CRB2
Description
crumbs homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:18688]
Coordinates
chr9:126136858-126141032:+
Coord C1 exon
chr9:126136858-126136974
Coord A exon
chr9:126137496-126137622
Coord C2 exon
chr9:126139117-126141032
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCCCTCCCTCTCCAGGTG
3' ss Score
11.68
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GTTGCCTGTCCCATCCAAGGAGTGCAGCCTGAATGTCACCTGCCTCGATGGCAGCCCATGTGAGGGTGGCTCTCCCGCTGCCAACTGCAGCTGCCTGGAGGGTCTTGCTGGCCAGAG
Seq A exon
GTGTCAGGTCCCCACTCTCCCCTGTGAAGCCAACCCCTGCTTGAATGGGGGCACCTGCCGGGCAGCTGGAGGGGTGTCTGAATGTATCTGCAATGCCAGATTCTCCGGCCAGTTCTGTGAAGTGGCG
Seq C2 exon
AAGGGCCTGCCCCTGCCGCTGCCATTCCCACTGCTGGAGGTGGCCGTACCTGCAGCCTGTGCCTGCCTCCTCCTCCTCCTCCTGGGCCTCCTTTCAGGGATCCTGGCAGCCCGAAAGCGCCGCCAGTCTGAGGGCACCTACAGCCCAAGCCAGCAGGAGGTGGCTGGGGCCCGGCTGGAGATGGACAGTGTCCTCAAGGTGCCACCGGAGGAGAGACTCATCTAGGCCAGCCTGGCTGCTGGCACCAGCACCTGGAGGTCCTGAATGGTTTCTACCTGGAGACCCAAGGAAGCTGCTTCCAGGGCTCGGGACATTGCTACGGAAGTGTCCCCTTGGCTGGCAGCCTCTGCCTCTGCCTCTGCCCCATCCTGGATGGAGGACGAGGGGAGCAACTCAGGGAAACAGAGGCCTAGAGAGGCTGCGGACTTCTCCATCCCACCCTCGGGGTTCCGCCTTGGCAGGTGTACGGCTGTGCGTGGGAGGGCACACGTGGGTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148204-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGTGCAGCCTGAATGT
R:
CTGTAGGTGCCCTCAGACTGG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)