BtaEX6046047 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94520482-94523379:+
Coord C1 exon
chr11:94520482-94520598
Coord A exon
chr11:94521230-94521347
Coord C2 exon
chr11:94523155-94523379
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCCCTGCCTCCCAGATG
3' ss Score
11.2
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTGCCTGTCCCACCAGAGGGGTGCAGCCTGAACATCACCTGTCTCAACGGTGGCCAGTGTGAGGAGGGGCCCCAGGGGGCCAACTGCAGCTGCCAGGAGAGCTTTGCTGGGCAGAG
Seq A exon
ATGTCAGATCCCCTGTGAAGCCAACCCCTGCTTGAATGGGGGCACCTGCCGGGCAGCTGATGGGGTGTACGAATGTGTCTGCAATGCCAGGTTCTCAGGCCAGTTCTGCGAAGTGGTG
Seq C2 exon
AAAGGCCTACCACTGCCGCTGCCGTTCCCGCTGCTGGAGGTAGCAGTGCCCGCGGCCTGCGCCTGCCTCCTCCTCCTCCTCTTGGGCCTCCTCTCAGGGATCCTGGCGGCCAGAAAGCGCCGCCAGTCAGAGGGCACCTACAGTCCGAGCCAGCAGGAGGTGGCCGGAGCCCGGCTGGAGATGGACAGCGTCCTCAAGGTGCCGCCCGAGGAGAGACTCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.0)
A:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=77.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCCTGAACATCACCTG
R:
GGACTGTAGGTGCCCTCTGAC
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]