GgaEX0001275 @ galGal4
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:9010424-9014494:+
Coord C1 exon
chr17:9010424-9010540
Coord A exon
chr17:9011012-9011138
Coord C2 exon
chr17:9014245-9014494
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAATAGCTTTTCCTTTCCAGTTG
3' ss Score
6.8
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
ATGGCCGTTCCCACCTGAGCAGTGTGGTAAGAACTTCACCTGTCTGAATGGTGGCAAGTGTACCACTGAGACCTGGGGAGCCAACTGCACTTGCAAGCCAGGCTTCACTGGAAGGAA
Seq A exon
TTGTCAAATTAATATAAACAAATGTGATCCAAACCCCTGCCAGAATGGAGGCACCTGTCAAGACTCTGAGAACAAATTCAAGTGTTTGTGCAGTGCCAGCTACACTGGAGAGCGCTGTGACATTAAC
Seq C2 exon
AAAGGGACTCCAGGTGCTTTCTTCCCCTCCCCACTAATTGAAGTAGCTGTCCCTGTAGCCTGTGGCTCTTTACTGCTGCTCAGTATTGGTCTCATATTCATGATTCTCACTGCAAGGAAGAGGCGCCAATCAGAGGGAACCTACAGCCCAAGTCAGCAAGAAGTGGCAGGAGCTCGGCTGGAGATGGACAGTGTCCTAAAGGTGCCACCTGAAGAGCGGTTAATATAGACACTGCCCTGGCAAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-'14-23,'14-20,15-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.147
Domain overlap (PFAM):
C1:
PF126612=hEGF=PU(84.6=27.5)
A:
PF126612=hEGF=PD(7.7=2.3),PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTCTGAATGGTGGCAA
R:
TGCCACTTCTTGCTGACTTGG
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]