MmuEX0012665 @ mm9
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37650050-37654623:+
Coord C1 exon
chr2:37650050-37650166
Coord A exon
chr2:37650895-37651021
Coord C2 exon
chr2:37651968-37654623
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAGCCGTTGTCTCTTCCAGATG
3' ss Score
10.76
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTGCCTGTCCTGCCTCAGGGATGCAACCTCAACTCCACATGCAAGGATGGCGCCCCTTGTGAAGGCGGCCCCTTAGGCACCAACTGCAGTTGCCAGGAAGGTCTTGCTGGCCTCAG
Seq A exon
ATGTCAGAGTCTCGACAAACCCTGTGAAGCCAGCCCTTGCTTGAATGGGGGCACTTGCCGGGTGGCCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGTG
Seq C2 exon
AAAACCCTACCTCTGCCTCTGCCGTTCCCACTGCTGGAGGTAGCAGTGCCTGCAGCCTGTGCCTGCCTCCTCCTTCTCCTCCTGGGCCTCCTCTCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTGGCTGGGGCTCGTCTGGAGATGGACAGTGTCCTCAAGGTGCCACCAGAGGAGAGACTTATTTAGGTTTGCCTGGCTGCTGGTGCCATGTCCTGAAGGTCCTAAAGGGTCACCACAGGACTTCTACCTGGAGACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCATGGTTGGCAGCCCTTGCTCTGTCCATCATGGACTCAGGAAATGGGGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTGTGTACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATGACAGGGTGTGTGCATGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=88.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGATGCAACCTCAACTCC
R:
CCTGCTGACTTGGGCTGTAAG
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: