DreEX0024164 @ danRer10
Exon Skipping
Gene
ENSDARG00000060081 | crb2b
Description
crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
Coordinates
chr8:2842801-2848406:+
Coord C1 exon
chr8:2842801-2842917
Coord A exon
chr8:2845693-2845819
Coord C2 exon
chr8:2847085-2848406
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTGTTCTGCAGGTG
3' ss Score
12.06
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATGGCGGTTTCCTCCTCGTGAGTGTGATGTGGATCTGCAGTGTGAGAATGGAGGCGTTTGCAGTGAAGGATCATGGGGAGCCAACTGTACCTGCAGACCAGGATTCACTGGAGTCAG
Seq A exon
GTGTGAGCTGGATATAGACGAGTGTGTGTCCGAGCCGTGTCTGAACGGAGGCTCATGTGTGAACAGACACAATCTCTACTTCTGTGAGTGTTTGCCGGACTTCAGTGGAGAAAACTGTCAGATTACT
Seq C2 exon
AAGCAGCTTCAGCAGGAGCTATGGCCGTGGCTGCTGCTCCTGGTCCCGCTGGCGGGTCTCTCCGTACTGCTGGCGGCTCTGGCTCTGCTCTGCCTGATCTTCAGCGCCCGGAAGAAGCGCCGCTCGGAGGGAACATACAGCCCCAGCCGGCAGGAGGCAGCAGGAGCACGAATGGAGATGGGCAGCGTGCTGAAGGTGCCTCCGGAAGAGAGACTCATCTAACACACACACACACACACACACACACACACACACACACACACACACAACATCAAATTAGACCATTTCAGAAGGACATCAGCAAGCAGAACATGCCTTCTATGTAAAAACTGATGGAGAAAACACTGAAAGCATGACTGCTGGAGAAATATAGAAGAAAAAAACATGCAAAATATGATTCTCGTATTCAGTGAACTTGTCTTGTTTGATACTGGAAATGTAAATACTTTTACACCAAGATACATTTATTTGAGAGGAAAAATTATTTACAGTATGAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060081_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.0)
A:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGGCGTTTGCAGTGAA
R:
CCATCTCCATTCGTGCTCCTG
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]