DreEX6083174 @ danRer10
Exon Skipping
Gene
ENSDARG00000060106 | crb2a
Description
crumbs family member 2a [Source:ZFIN;Acc:ZDB-GENE-060612-1]
Coordinates
chr21:8386235-8388087:-
Coord C1 exon
chr21:8387971-8388087
Coord A exon
chr21:8387104-8387230
Coord C2 exon
chr21:8386235-8387029
Length
127 bp
Sequences
Splice sites
3' ss Seq
TATGCATATTTTTTCCACAGATG
3' ss Score
10.5
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
ATACAACTACCCACCACTAAAGTGTGCCCTGGATGTTGAATGTGAAAATGATGGTGTTTGCCATGACACTCCGTGGGGGGCAAACTGCACCTGTCCTCCAGGATTCACCGGAGAAAG
Seq A exon
ATGTGAGAGAGAAATCGATGAGTGTGCTTCTAGCCCTTGTCTAAATGGTGGATCGTGTCTGGATCGCCTCAACCGCTTTCAGTGTTTGTGTCCCGCAGGATTCAGTGGCCAGTTCTGTGAAACAAAT
Seq C2 exon
AAACAAGCACAGCAAGATCATATACCATGGCTGGCGATAGCGGTTCCATTGGCTTGTGGCTGTATCCTCTTAGTGGCCATTGGTCTCATTTTCATGTTAATGACTGCACGAAAGAAGCGGCAGTCGGAAGGAACTTATTCCCCAAGTCATCAGGAAGTTGCTGGTGCACGTCTGGAGATGGACAGCATGCTGAAAGTACCACCAGAAGAACGGTTAATATGAGATAAAATGCAGAGGCTTTAATATTATTGACTTTTCCAAGACGATGTGGCATTATGGAGCCACAACGAGAACATCAAACAAGCAACCTGAAAGTGCACTGCGAGAGGAAACTTGAAATTGGAAAATGGGAATGAATTTAATATGAATTAACTGTCATTATATGACTGTGGATGTTAACCAGAAACTCTTCCAGATGACATTGGACTTGGTGATGATTTACCTCATGGCATTATATGCCTTAACAGCTCTGACAAAGTGTCATACTGTAAAGAGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060106-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=80.0)
A:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTTGCCATGACACTCC
R:
GCATGCTGTCCATCTCCAGAC
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]