RnoEX6023211 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141147113-141166278:-
Coord C1 exon
chr5:141166143-141166278
Coord A exon
chr5:141151685-141151834
Coord C2 exon
chr5:141147113-141147262
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACTTGCTGTTTATTTCCTAGACC
3' ss Score
9.56
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTTTCAGAAAGAGAGAAGGAACAGATCTCTGAGCAGTTGTGTGCCTTGAACAAGACTTACCATGATCTTTGTGATGGTTCTGCAAACCAACTCCAGCAGCTCCAGAGCGAGCTGGCTCAGCAGACAGAACAAAAG
Seq A exon
ACCACAGTGTTAAATTGGCACAAGGAGCTAGAAGGCAAACTTCAAGATCTGAAAGCCTGGGTTGACAGAACCAGTCTTACTCTGCATAGCAAGGGATGTGACACTCAAACTGATGCTGACAGCCTGAGTCCCACTCTCCAGGGATATGAG
Seq C2 exon
ACTCTGCAGAAGCAACAAGACACGTGTCATAAGAAGCTGGAGGATCTCCGCAGCTGGGTCAGACAGGCAGAAAGGGCACTGGAGAGGCACCGGGGCAGGGCCTCTCAACAAGAGCTTTCTGCTCTGCAGCAGAACCAAAGTGACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-'58-69,'58-65,63-69=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.380 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTGTGTGCCTTGAACA
R:
ACTTTGGTTCTGCTGCAGAGC
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]