RnoEX6023208 @ rn6

Exon Skipping

Gene

ENSRNOG00000016047 | Macf1

Description

microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]

Coordinates

chr5:141147113-141166278:-

Coord C1 exon

chr5:141166143-141166278

Coord A exon

chr5:141157139-141162457

Coord C2 exon

chr5:141147113-141147262

Length

5319 bp

Sequences

Splice sites

3' ss Seq

GTTTTAATTCTTTCTTTTAGGGT

3' ss Score

11.63

5' ss Seq

CAGGCAAGT

5' ss Score

3.1

Exon sequences

Seq C1 exon

GCTTTCAGAAAGAGAGAAGGAACAGATCTCTGAGCAGTTGTGTGCCTTGAACAAGACTTACCATGATCTTTGTGATGGTTCTGCAAACCAACTCCAGCAGCTCCAGAGCGAGCTGGCTCAGCAGACAGAACAAAAG

Seq A exon

GGTTGCAGAGCAGTTGCTGGGGTGATTGACCTAGGCACAGTGGAGATATTCCCCATCTTCAGAGCCATGCAAAAGGGCCTCATTGACCAAGACACAGGCCTTGTGCTCCTGGAATCCCAGGTTATCATGTCTGGCCTCATTGCTCCTGAGAACAGTGAAAAGCTCTCTTTGGAAGAGGGCCTCACCAGAAATCTCATTAGCCTTCCAATGTACCAACACCTCCTAGGACTAAGGGATTCTCTGTCTTTAATAAGTAGTCTTACAGGGACCCAAGGCTCCCTTTCTGTGGTGGAAGCAATTGAAAAGAAAATAGTCAGTGAGAGATTTGGACTGAAAGTCTTAGAAGTTCACCTGGCAACTGGAGGTTTCAGTCTCCCACCAAGTGAGAACTATATTAATCTGGAAGAAGCTTTTCATCAAGGCTTCATTGCATCATGGCTTCATTCAGAATTACAGTCTCACCTGAGAACATCCAAGAATTTGATAGACCCCAACACAGCCGAAAAAGTTGGCTTGCTGGAACTGATGCAGCGATGTATCAGCCATCAAGAGTCAGGGTTAAAATTGTTGCCTGTCAAGCAGTTGGCAGGGGGAATGGTTAGCTTGAAATCAGGTGGGAAAGTTAGCATTTTCCGTGCTGTTCAGGAAGGGCTGATAGATAGGCAGGTCACTGTCCGGTTACTGGAAGCTCAGCTGTTTGCTGGTGGCATAGTGGATCCAAGAACAGGACACAGACTTACAGCGGAAGAGGCTGTGAGACATAATTTGATTGACCAAGATATGGCCTGTGCTATTCTTATAAGGCAGCTTCAGACAGGAGGCATCATTGACACCGCCACAGGAGAAAGAATGACTATTGACGAAGCAGTGACCAATAATCTAGTAGCTGCTAAGATTGCTCTTGTAATTCTGGAATCCCTCTGGTCATTTATGGGGTTACTGTTGCCTGAATCTGGAGAGATCCTCCCAATTACAGATGCTCTAGAACAAGGTATTGTGTCTAATGAATTAGCACATAAAATCCTCCATAACCGACAGCAAATTGAGGCTCTTTTTCTACCAACAATCACAGAGGTTTGGTCCTGGGAAAAAGCAACAGAGAGTGGTATCCTAGATAAAGATCTTGCCAATAACTTAAGGTCAGTCTGTATCCCTGACATGAGGCCCCACATACAACTAGCAGACTCTGCAGAGCAAAGCAAAGTAGGCGTTGCTGCTGGGAAACCACCTCTGTCGTGCCAAAGAGAGGGAAGAACCAGCCGTGAAGAGAAGCTGCTGTTTCAGCTGATGACTCACAGCTACATTAATGCACACACTGGACAGAGGCTGCTTCTACTGGATCAAGAGCTGGTGGAGATGCTAACATCCAGAGATGAGTATCAAGTAGGTCTTCCAGAAGTATTTGAAATTCAGCCTCAAAGACTCGACACTTCTAAGGATTTACAAGAATTGGATCCTGGGACTATCTCCCAAATTTCCAGTGCTAGGAAGCCCTGTGAATCCCAGTTTCCTTCTCAGAGCAAGGGCTATCCCAGTCAGGAAAACTGTACTCAAGCAAAAGGTGAGAGGTCTGTCATAGGAAGAGAGTGCTCTTCTGCAGAGAGTCCTGAAAGGGAGCTGTTTGTGGGAGAACAAGGAGCCATTACTGAAAATGTTGGCAGTTTGAAGGTCATCAATAAAGTCAAATTAGAGCTACAAAGTCCATTGTTAGGAAGTAGAAAGGAAGAGCAAACAGAAATGTTTAGCGAGGAAAATGTCAGCAGTGATCCCCTCCTTGTAGAATGTCCTGAGGGATCTGAAGATATGTCCTTGGTGCTTGACAAGGACCTTTCTACTGAGAAGTCAAAATGCCAAGCTCCCACAAAGTCTTCATTTACACGTCACAAAGAACAAGTGAAGACTGTCAAAGCTGACCATATTCCAAGTGAAACTGGAATACCACTCACAAAGTCTCAAAATAAAACTTCACAAGTTCAGGTAGATGCTTCTGTAAGTTTGAAATCAGAATTTAAGTCAGAATACGATGAGAAAGAGTTAAATGAAACACTTTTGGTTAAGGGTAGCCACAAACAAAGCCAAGAAGGACAGAGTGTTCCAGATGGTCAGATGGTGGTTTTAGAAAAGGCTGATACAGAAGATAATGGTGATGAGCCTTCCTTGTTGTGTAGTTCTCCTTTTGAAGATGCTACCTTAAGTACATTATCTGCACAGCTACAGGATGGTGGTATCTTTCATGAAGAAACAGGTCAGAAACTCTTACTAAATGAAGCAATAGCCCAAGGCCTTGTGTCTAGCCATACTGCTGTGAAACTTATGGGGAAATTGAACATGTTTCGGGGCTTCTTCGACTCCCAGACATGTGAATCTTTGACAACTGAAGAAGTCATTGACGAAGGTCTAATGGACGAGAAATTATTATGTAATGTCCTTATGTCAGACAAAGCTATAAGTGGTATCTTAGACCCTAGGACCCACTCACTGTGCTCTGTACAGGAGGCTGTAGCAGCTGGACTTCTTGACAAGGAGACAGCCACAAGAATTTTAGAGGGACAGGTGATAACTGGTGGAATTGTTGACCTGAAACGAGGCAAAAGGCTTTCAGTAACTTTGGCCTCAAATCTTGGTTTGGTAGACACTACTGACCAGACAGAACTTATCAATCTGGAAAAGGCTACCAAAGGCAGAGGTGCTGAAAAGGCGGTTAAAGAGAGATTAATTGGGCTACAGATGGAAACAACAGGACTTCTGGACCCTGAAAGTAAAGCACCATTAACAGTCTTGCAGTCCATTGATAGAGGTCTTATAGAGAGAGAAGAAGCTATTTATCAGTTGACTAAGCAAGTACTTGATGGTGGTATCATTCATCATATATCTGGCTTGAGACTCTCTGTTGATAATGCCTTTAAACATGGCATGATTGGTGAAGATGTAGCCAGGCAGCTCAGAAAAGTTGAGAACTTTAACCACCATCAATTTTTTCATCCTCAAACAAAGGAAGCTCTTTCCTTCTCAGAAGCCATAAAATTAGATCTTGTTTCTCCAGACTTGAAAAGAGAAATCCAAGAGATTCTGGACTTTAGTGAAAACTTGGGGGATCTCATTTATGGCCAGAAATTGACCTCGGTAAAAGCTAACAAAGAAGAATCCTTAGCTAATAAAACAGCATTGCCTTCGAGAGTGATACATGGGGTTATAGATCCTGAGAGCTGCACAACAATTCCCTACTCAGAATTGGTAAAGAAATGTAGGATTGACATTGAATCTGGATGGAGATATCTCGAAGTAATTCCACTCTCTGATATTAAAGATGAGATGAGCAACAAAGTGCTAACACCATCTGAAGCAATTCAGCGTGGAAAAGTAGACTTTGGGTCTATGTTGAAGGTTTTGGAAGCTCAGGCGAACACTGGTGGAATCATAGATATGGCCACAGGAAAAAGAGTGACATTGGCATCAGCTTTAGAACAGAAACTCATAGATGAAAACATGGCCAGGATTATTGCATCCCATCAAGTGTTAACTGGAGGAATTATTGATATATATAATGATCAAAGAGTGACTTTAAATGATGCTGTTGAGAAAAGGTTGATTAGCCCTGAACTGGCAACTATGATCCAAGCAGATACCTTAGGAAAGCAAGGTGGGACTGGAGTATGTGAATTAAAGGGTGAATTTCTAAGAAATGAGTTTAGGAAGGCCACCAGGGAGAGTTATGATAAAGAGAAACATGAGGGAGTGTTACAAGTTGGAAGTCAGTGTGCTCAAGAAAAGGCTAACGTAAGGGTTTCTTATGGGGTAAAGGTAGGAAAGGGCAAGAAGATTTCAGTAGAGATGGAAGGCCAGCGTCAAGACGAGGAGAAGGCTTCTTCAGACAATGAAGTATCTGCCAGCATCGTAAGTCCTGGTGGTCTTGAGGGTGAATCTACACACCAAGTTTTGGTGACGCATCCCTGCTCAGGATCTTCTGATTTGAAACTCATAGAGGAAGCCAGGAGTCCAGAGGTAGAGCAGGAGGAAGCAGTAGCACGAATGAAGATGACTCCTCACGTAAATCGGTCAACCCCAGGCCTGGATGCTGGAGAAGCAAGAGACTGTCCAGGGAGAGTGGGTTCGAAAGGACAAGAATCTAAGCATGAACCAGCAGGCAAACTGTCGAGTGTGCAGGCAGCGAATGTGGAAGTTGGTAGGAGAGGAAGGAGAGAGACGGGTGGAGAGGAAAGAGTCCAAACAAACAAAGTGGCAGCAGGTCCTTCTGAGGAAGAGTTGGACCAGGAAGTTACAATTGGTGACGAACATGGCTCCTTTGTAAAGAGCCAGCCTATGAAGACAATTGGAAATGACAGGGGAAAAGAAGGTGGTAGAGAAAAGGACTTTTCTCTTGTTTGTAAAACCGAAGGCTTCCCTTCCCAGATGACATTCAAAGATGCTTCCCTAGAAAATCAAAATGCTTTGATGTTCTTCAGCGAAGGGGAAACGAAAACTGTCAACCTCTGCTCGATTTTAAAACAAAGAGAAAAGTTATCTCAAGAAACTGCTAGTATTGTCCAGAAGGAACCATTCTCTTCTGAGATTCCAAGACCTGAAAGACTGAACTCCCAGGAATCAGATGGAGAATCCCATATTTCTGACATGCCCTGCATTTCCAAAGGTCCCATGGCTGCCCAAATTACCACAAGACAGGAGACTACTGATGAACAAGACCTGAGTATTACATCTAAGACTGCAGAGACCAAAGATAGGATTTTCCCATCCAAAAATTATAAAGAAAAGTTACTTCAAGAAATACCTATGGACTCAACAAGAGCCCATAAACTGAAAGAAAGCACAGTTTCCACTCTAGACACGGAAGGACTCGGTTATCTAGATTCCTCAGATATAAAGGCTCTTCATGAGGATAGCAGAGCAGATCGTGAGTTTAGTGGACATCAGAAATCAAAAATAACAACAACCCAGGAAGTAAAATTTCTAGAAGTGGTAAATCCCCTAGTTAGAGACGCAGAAGGTCACAGAGGGTCCTCTAAGGACAGAGTGGCTCAAAGAGGACCCAGAACCTTGGCATCTCTTCTTCCGGAGAAACTGCCCGCAGGGACAGCACAGAGTGAGAATACAAAGCAGCATGACACAGTCATTATTGCCACCACTCCCGAAATGAGGGAGGAGATGCCACTGTCCCTGCCATGTTCTCCATTGAAGGTGGATGAGCAGATACCTAAGGAGAAGCACAAAGAGCTCCCTGGAGATGAGCGAGCCTCCTGCATGGCTACACCTAGTGGGAAGGGGAGTGAGGGTGTAAAGCCAGCACCTTGCAGAGCAACTCAG

Seq C2 exon

ACTCTGCAGAAGCAACAAGACACGTGTCATAAGAAGCTGGAGGATCTCCGCAGCTGGGTCAGACAGGCAGAAAGGGCACTGGAGAGGCACCGGGGCAGGGCCTCTCAACAAGAGCTTTCTGCTCTGCAGCAGAACCAAAGTGACTTGAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000016047-'58-69,'58-60,60-69=AN

Average complexity

A_C2

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.123 A=0.384 C2=0.540

Domain overlap (PFAM):

C1:

NO

A:

PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.5),PF0068115=Plectin=WD(100=2.5),PF0068115=Plectin=WD(100=2.5),PF0068115=Plectin=WD(100=2.4),PF0068115=Plectin=WD(100=1.9),PF0068115=Plectin=WD(100=2.5),PF0068115=Plectin=WD(100=2.4),PF0068115=Plectin=WD(100=2.3),PF0068115=Plectin=WD(100=2.4),PF0068115=Plectin=WD(100=2.5),PF0068115=Plectin=WD(100=2.2)

C2:

NO

Main Inclusion Isoform:

ENSRNOP00000069807