RnoEX6026615 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112407884-112411096:-
Coord C1 exon
chrX:112410980-112411096
Coord A exon
chrX:112408645-112408836
Coord C2 exon
chrX:112407884-112407936
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATATGTTCTTTTCTTCTCAGGAG
3' ss Score
9.1
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTCCAAAGGCCTACCTGGCATCCCTGGCAAGGATGGCCCTAGTGGGCTTCCAGGCCCATCTGGAATCCTTGGTGATCCTGGTCTCCCTGGACTACAAGGACCTCCAGGATTTGAAG
Seq A exon
GAGCTCCAGGAAATCAGGGCCCCATTGGGCAGCCTGGGATGCCTGGACACAGTGTGAGAGTGGGCTACACATTAGTAAAACACAGTCAGTCAGAACACGTGCCACCATGCCCCATTGGCATGAGCCAGCTATGGGTGGGTTACAGCTTGCTGTTCGTGGAAGGGCAGGAGAAAGCCCATAACCAGGATCTGG
Seq C2 exon
GATTTGGGCTGGGCTCCTGCCTGCCCCGATTCAGCCCCATGCCCTTCATTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'39-42,'39-40,40-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.477 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(44.1=65.0),PF0139113=Collagen=PU(60.0=90.0)
A:
PF0139113=Collagen=PD(38.3=35.4),PF0141314=C4=PU(40.6=66.2)
C2:
PF0141314=C4=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGTGGGCTTCCAGGC
R:
TAGAATGAAGGGCATGGGGCT
Band lengths:
132-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]