MmuEX6046160 @ mm10
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:141169393-141172226:-
Coord C1 exon
chrX:141172110-141172226
Coord A exon
chrX:141169653-141169750
Coord C2 exon
chrX:141169393-141169490
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTATGTCCTTTTCTTCTCAGGAG
3' ss Score
9.37
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GTTCCAAAGGCCTACCTGGCATCCCTGGTAAGGATGGCCCCAGTGGGCTTCCAGGCCCATCTGGAATCCTTGGTGATCCTGGTCTCCCTGGACTACAAGGACCTCCAGGATTTGAAG
Seq A exon
GAGCTCCGGGAAATCAGGGCCCCATTGGGCAGCCTGGGATGCCTGGGCACGGTGTGAGAGTGGGCTACACACTAGTAAAACACAGTCAGTCAGAACAG
Seq C2 exon
CCCTTTCGACTCATGGTTATGAAATAGGCCACAGCTCTGGGGTCAAAAGGATTTTGATTCAAATGCTGGTCCTACTGCTTCAAAGCCACAGGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273_MULTIEX1-13/16=12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.328 C2=0.121
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(44.1=65.0),PF0139113=Collagen=PU(61.0=90.0)
A:
PF0139113=Collagen=PD(37.3=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(12.0=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTAAGGATGGCCCCAGT
R:
TTTGAAGCAGTAGGACCAGCA
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types