DreEX6007351 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50650358-50651790:-
Coord C1 exon
chr7:50651674-50651790
Coord A exon
chr7:50650903-50651094
Coord C2 exon
chr7:50650358-50650644
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTATGTCCCCCACAGGAC
3' ss Score
11.33
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GCCCCAAAGGATTCAGAGGCCAAGTGGGTAGACTTGGTCCAGTTGGATTAGCTGGATCTCCTGGATTTACTGGTGATCCTGGTCCTTCTGGAATCCAAGGACCCACAGGACTCCAAG
Seq A exon
GACCTCGTGGTAAACCAGGGTTGCCAGGTATTCCTGCTCCACCGACGCGCAGCACTGGCATTGGTTATACTTTGGTGAAGCACAGTCAATCCACACGGGTGCCCATGTGTCCTGAGGGAATGACCAGGCTCTGGGAGGGGTACAGTTTGCTCTATGTGGAGGGACAAGAGAAAGCGCACAACCAGGACCTGG
Seq C2 exon
GATTGCCCGGCTCCTGCCTGCCTCATTTCAGCACAATCCCCTTCCTCTACTGCACCGCCAATGAAATTTGCTACTATGCAAGCCGCAATGACAAGTCCTATTGGCTGTCCACCACAGCGGCTATTCCCATGATGCCTGTGGCAAATCAGGAGATTTCCCCATACATTAGCCGCTGCTCAGTGTGTGAAGTTCCATCTCAACCAATCGCTGTCCATAGCCAAGATCTGACCATACCAACATGCCCTCAGGGCTGGAGAAGTCTGTGGATCGGTTACTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061-'46-49,'46-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(46.7=70.0),PF0139113=Collagen=PU(68.4=97.5)
A:
PF0139113=Collagen=PD(29.8=26.2),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.9=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGCCAAGTGGGTAGAC
R:
CAGGCATCATGGGAATAGCCG
Band lengths:
243-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]