BtaEX6005978 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61055343-61058106:-
Coord C1 exon
chrX:61057990-61058106
Coord A exon
chrX:61056921-61057112
Coord C2 exon
chrX:61055343-61055629
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCTCTCCATCTCAGGAG
3' ss Score
9.26
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GATCTAAAGGTTTACCTGGCATCCCTGGCAAAGATGGCGCCAGTGGACTCCCTGGCCCACCTGGGGCTCTTGGTGATCCTGGTCTCCCTGGACTACAAGGCCCTCCAGGATTTGAAG
Seq A exon
GAGCTCCAGGGAAGCCGGGCCCCTTCGGGAGGGCTGGAGTGCCTGGACAGAGCCTGAGAGTGGGCTACACCTTGGTGAAGCACAGCCAGTCAGAACAGGTGCCCCTGTGCCCCAGCGGGATGAGCCAGCTCTGGGTGGGTTACAGCCTGCTGTTCGTGGAGGGGCAAGAGAAAGCCCACAACCAGGACCTGG
Seq C2 exon
GGTTTGCTGGCTCCTGCCTGCCCCGCTTCAGCACCATGCCATTCATCTACTGCAACATCAATGAAGTGTGCCACTATGCCCGACGGAATGATAAGTCCTACTGGCTCTCCACCACCGCCCCCATCCCTATGATGCCGGTCGGCCAGACACAGATCCCCCAGTACATCAGCCGCTGCTCTGTGTGTGAGGCGCCCTCGCAAGCCATTGCTGTGCACAGCCAGGACATCACCATCCCACAGTGCCCCCTGGGCTGGCGCAGTCTGTGGATTGGGTACTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(31.0=67.5),PF0139113=Collagen=FE(60.0=100)
A:
PF0139113=Collagen=PD(33.8=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.9=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGCCCTCCAGGATTTGA
R:
GATGGTGATGTCCTGGCTGTG
Band lengths:
256-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]