GgaEX0011970 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14057525-14059057:+
Coord C1 exon
chr4:14057525-14057641
Coord A exon
chr4:14058350-14058541
Coord C2 exon
chr4:14058771-14059057
Length
192 bp
Sequences
Splice sites
3' ss Seq
AGTTCTCTTCTTCCTTCTAGGTG
3' ss Score
11.25
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGCAAAGGGTCTGCCAGGCAGATCTGGTTTGAAAGGACGTGACGGTTTACCTGGATCACCTGGCATTGCTGGTGACCCGGGACCTGTGGGTGCCCCAGGACCTCAGGGATTTGAAG
Seq A exon
GTGCGGCTGGAAAGCCAGGCGCGCTTGGCTTGCCGGGAATGCCTGGTCGGAGCGTGGGTGTCGGGTACACCTTAGTGAAGCACAGCCAGTCAGACCAAATCCCGCCTTGTCCCATTGGCATGAACAAGCTCTGGGATGGCTACAGCTTATTGTACGTGGAGGGGCAGGAAAAATCACACAACCAGGATCTGG
Seq C2 exon
GTTTTGCTGGCTCTTGTTTGCCCCGCTTCAGCACTATGCCTTTTATTTACTGCAACATCAATGAAGTGTGCTACTATGCCAGCCGAAACGACAAGTCCTACTGGCTGTCCACCACCGCTCCCATCCCCATGATGCCAGTGGACAGCAATCAGATCCCACAGTACATCAGTCGTTGCTCCGTGTGCGAAGCACCTTCCCAGGCTGTGGCTGTGCACAGCCAGGATATCACCATCCCACAGTGTCCCCTCGGTTGGCGCAGCCTCTGGATAGGATACTCCTTCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.246 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(46.7=70.0),PF0139113=Collagen=PU(63.9=97.5)
A:
PF0139113=Collagen=PD(34.4=32.3),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.9=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGAAAGGACGTGACGG
R:
CTGATTGCTGTCCACTGGCAT
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]