MmuEX6046160 @ mm9
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:137603137-137606769:-
Coord C1 exon
chrX:137606653-137606769
Coord A exon
chrX:137604102-137604293
Coord C2 exon
chrX:137603137-137603423
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTATGTCCTTTTCTTCTCAGGAG
3' ss Score
9.37
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTTCCAAAGGCCTACCTGGCATCCCTGGTAAGGATGGCCCCAGTGGGCTTCCAGGCCCATCTGGAATCCTTGGTGATCCTGGTCTCCCTGGACTACAAGGACCTCCAGGATTTGAAG
Seq A exon
GAGCTCCGGGAAATCAGGGCCCCATTGGGCAGCCTGGGATGCCTGGGCACGGTGTGAGAGTGGGCTACACACTAGTAAAACACAGTCAGTCAGAACAGGTGCCACTATGCCCCACTGGGATGAGCCGGCTCTGGGTGGGTTACAGCTTGCTCTTCGTGGAGGGGCAGGAGAAAGCCCATAACCAGGATCTGG
Seq C2 exon
GATTTGCTGGCTCCTGCCTGCCCCGATTCAGCACCATGCCCTTCATATACTGCAACATCAATGAAGTGTGCCACTATGCCAGACGCAATGATAAATCTTACTGGCTCTCCACTACTGCCCCCATTCCCATGATGCCTGTGGGCCAGACCCAGATTCCCCAGTATATCAGCCGCTGCTCTGTATGTGAGGCACCCTCACAAGCCATTGCTGTACACAGTCAGGACATCATTGTCCCACAGTGCCCTCTGGGCTGGCACAGCCTCTGGATCGGATACTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'47-49,'47-47,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.338 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(44.1=65.0),PF0139113=Collagen=PU(61.0=90.0)
A:
PF0139113=Collagen=PD(37.3=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.9=31.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATCTGGAATCCTTGGTG
R:
GGTGCCTCACATACAGAGCAG
Band lengths:
256-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: