RnoEX6030056 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146077698-146089508:-
Coord C1 exon
chr6:146089409-146089508
Coord A exon
chr6:146086937-146087148
Coord C2 exon
chr6:146077698-146077931
Length
212 bp
Sequences
Splice sites
3' ss Seq
ACGGCTCTTTCCTTTTGCAGCTC
3' ss Score
11.63
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTTCAGGCTCCTATTGTCCTCAAGATGGTTAAGATACTGAGAACAAGGCAAAGCAGCTACCTTCCTGCTCTGAAGGGCATCTTCACCACGGTAGAAAATG
Seq A exon
CTCTTCTTGAAGCCCGGGATGTGGAACTTCACCTAAGACCTCTGAGGAAGCACATTCAAGGTCTCCAGGAGGCAGATTTCCCACAGACCGGAATACTGATTGCACCGTTGATTCACACCATCTGTCTCATCTGGAGCCATTCCAAGTTCTATAACAGCCCTGCTCGGGTTATAGTTTTACTGCAAGAGTTTTGTAACCTCTTCATTGACCAG
Seq C2 exon
GCAAGAGCATACCTGTCACCTGAAGACCTTTTGAAAGGAGAAATTGAAGATGCACTGGAAAAGGTGCAGGTGGCCATTGGTGTCTTAAGGATGTTCCAGAATTCTTTTTTCAAGTATCGAAGGGGATTAACAAGCTACTTCACAGGAGACACAGAGCAGAGACCCTGGGATTTCCAGTCTCACCTGGTCTTTAGCAGATTTAACAAATTTCTTGACCGGCTGGTAAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.7=100)
A:
PF083857=DHC_N1=FE(12.1=100)
C2:
PF083857=DHC_N1=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACAAGGCAAAGCAGCT
R:
TTTTTACCAGCCGGTCAAGAA
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]