BtaEX6026642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30431943-30442381:+
Coord C1 exon
chr4:30431943-30432042
Coord A exon
chr4:30434965-30435176
Coord C2 exon
chr4:30442148-30442381
Length
212 bp
Sequences
Splice sites
3' ss Seq
TAATGGTGGTTTCCTTTCAGCTC
3' ss Score
7.17
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTCAGACTCCTATTGTCCTCAAAATGGTTAAGATCCTGAAAAATAAGCAAAGCAGCTATTTTCCAACATTGAAGGACATTTTCATGGCTGTGAAAAATG
Seq A exon
CTCTGCTCGAAGCCCAAGATGTGGAACTTTACCTGAGACCCCTGAGGAGACACATTCAGTGTCTGCAGGAGACGGAATTCCCACAGACCGGTGTATTAATTGCCCCGTTATTTCATACCATCTGTCTGATCTGGAGTCATTCCAAGTTTTATAATACCCCTGCTCGGGTCATAGTTTTATTGCAAGAGTTTTGTAATCTCTTCATTGACCAG
Seq C2 exon
GCAATAGCTTACCTTTCACCTGAAGATCTCTTGAAAGGGGAAATTGAAGACTGTCTGGAAAAGGTTCAAGTGACCATTAACATCTTAAAGACTTTCAAAAATTGTTTCTTCAACTATAGAAGAGGATTGGCAAGCTATTTTGTGGGAAATAAGGAACTGAAACCATGGGATTTCCAGTCTAATCTGGTGTTTCATAGATTTGACAAATTTCTTGATCGTTTCATGAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'11-8,'11-6,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.7=100)
A:
PF083857=DHC_N1=FE(12.1=100)
C2:
PF083857=DHC_N1=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAAAATAAGCAAAGCAGC
R:
TCATGAAACGATCAAGAAATTTGTCA
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]