GgaEX6015798 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG21]
Coordinates
chr18:1035597-1038258:+
Coord C1 exon
chr18:1035597-1035672
Coord A exon
chr18:1037657-1037868
Coord C2 exon
chr18:1038025-1038258
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGCTGCTTCACACAGCTT
3' ss Score
6.71
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
ATGATGGAGATGCTAGAGAGAGTTGAGAGCAGCTACTTACCAGCCTTCAGAACTATGCTCATGGATGTTGAAGCAG
Seq A exon
CTTTGAGCGAAGCCCAGGACATCCACCTGCACCTGAAGCCCCTCAGGCGCCCTTTGGAGGACATAGAGAGGACTGATTTCAGCAAGGTGCAGCCACTCCTGCTCCCCCTGCTCCACGTGGTGTGCTTGACCTGGGTCACCTCCAAGCACTACAGCCAGCCTGCACGCATTGTGGTGCTGCTGCAGGAGATCTGCAACCTTCTCATCCAGCAG
Seq C2 exon
GCCCTGGTATACCTATCTCCAGAAGACCTTCTAAAAGGGGAGACGGAAGAGAGTATGGGCAAGGTGCAGATGGTGCTCAGCGTCCTGAATGGATTCAAAGAGACATTTGAGGACAGAAGGGAAGAACTTCACACCTACTATAAACCAGACCAAGAAGTGAAGGAGTGGGATTTCCATGCCACGATGGTGTTTGCAAGGCTGGACAGCTTTCTGAAGAGACTGGAGATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026090-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(7.8=96.2)
A:
PF083857=DHC_N1=FE(21.9=100)
C2:
PF083857=DHC_N1=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAGAGAGTTGAGAGCAGC
R:
TCCACCATCTCCAGTCTCTTCA
Band lengths:
298-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]