GgaEX6015798 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1016865-1020185:+
Coord C1 exon
chr18:1016865-1016995
Coord A exon
chr18:1019584-1019795
Coord C2 exon
chr18:1019952-1020185
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGCTGCTTCACACAGCTT
3' ss Score
6.71
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTGTGATGACCTGGAGTGCATTTACAGTCAGCTGAGGACAAGGAAGGTTAGGAACATGATGGAGATGCTAGAGAGAGTTGAGAGCAGCTACTTACCAGCCTTCAGAACTATGCTCATGGATGTTGAAGCAG
Seq A exon
CTTTGAGCGAAGCCCAGGACATCCACCTGCACCTGAAGCCCCTCAGGCGCCCTTTGGAGGACATAGAGAGGACTGATTTCAGCAAGGTGCAGCCACTCCTGCTCCCCCTGCTCCACGTGGTGTGCTTGACCTGGGTCACCTCCAAGCACTACAGCCAGCCTGCACGCATTGTGGTGCTGCTGCAGGAGATCTGCAACCTTCTCATCCAGCAG
Seq C2 exon
GCCCTGGTATACCTATCTCCAGAAGACCTTCTAAAAGGGGAGACGGAAGAGAGTATGGGCAAGGTGCAGATGGTGCTCAGCGTCCTGAATGGATTCAAAGAGACATTTGAGGACAGAAGGGAAGAACTTCACACCTACTATAAACCAGACCAAGAAGTGAAGGAGTGGGATTTCCATGCCACGATGGTGTTTGCAAGGCTGGACAGCTTTCTGAAGAGACTGGAGATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.6=100)
A:
PF083857=DHC_N1=FE(12.0=100)
C2:
PF083857=DHC_N1=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTGAGGACAAGGAAGGT
R:
ACCATCGTGGCATGGAAATCC
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]