DreEX0027515 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:191742-193720:-
Coord C1 exon
chr12:193590-193720
Coord A exon
chr12:192552-192763
Coord C2 exon
chr12:191742-191975
Length
212 bp
Sequences
Splice sites
3' ss Seq
GGCATTGTTGTGTTTTTAAGCTC
3' ss Score
7.12
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GCTTGCTGATCTTCAGGGAATCCAACAGCAGCTCCAGTCTTCTAAAGTCCTGACGCTGGCGGAGCTTCTGCTCGCTGTGGACAGCAGCTATTATCCTGCATTTGCAAAAATGATCCAGGACGTCATGGAAG
Seq A exon
CTCATAACGAGTCGAAGAACATCACAACCTTCCTGAAGCCGCTGGAGAGGCTGATCGAGGATCTGGAGAACGCAGACTTCACTGAGCTGAAGGCAAAGATCCCTCCGCTCATGCACACGGTGTGTCTGATCTGGGCCAACTGCAGATACTACAGCAAACCAGCCCGAGTCATTGTGCTCCTGCAGGAGATCTGCAACCTCCTCATACAGCAG
Seq C2 exon
GCCCGGAGTTTCCTGAACCCGGATGACATCCTGAAAGGTGATGTTCTGGAGAGTCTGCTGCGTGTTCAGGCCGCTGTAGACCTGCTGACACACTTCAAGAACACATATGAGGACAGAAGAGCCAACCTGAGCCACTACCAGAAGAACGAAGACCCAGTCAAGCCCTGGGATTTCTCTCCCCTCATGGTGTTCGTCGGCCTGGATCACTTCATGAAGAGACTCAGAACTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.4=100)
A:
PF083857=DHC_N1=FE(16.5=100)
C2:
PF083857=DHC_N1=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGCAGCTCCAGTCTTC
R:
CGAACACCATGAGGGGAGAGA
Band lengths:
303-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]