RnoEX6047722 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52685957-52697244:-
Coord C1 exon
chr10:52697114-52697244
Coord A exon
chr10:52687941-52688152
Coord C2 exon
chr10:52685957-52686190
Length
212 bp
Sequences
Splice sites
3' ss Seq
CCATCTTTGATTCCTTCCAGCCC
3' ss Score
8.73
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCGAGGACCTGGAACACATTTATAACCAACTAATGACAATCAAGGTAAGGGGCATGGCTGGACTCCTGGACAAACTTCAGAGCAGCTACTTGCCAGCTTTCAAAGCCATGTTCCAAGACGTTGAAGCAG
Seq A exon
CCCTGACAGAGGCCCAGGACATCCGTGTGCACCTGTTACCGCTCCAACAACACCTGGACATCCTGGAGAACATGGAGTTTCCCGAGGTGAAGGGCAGGCTGCGGCCTCTGCTCCATGTGGTCTGTCTGATTTGGGCTAACTGCAAGTGGTACCGCTCCCCAGGGAGGCTCACGGTGCTGCTCCAGGAAATCTGTAACCTCCTCATCCAGCAG
Seq C2 exon
GCCTCTAATTACCTCAGCCCGGAAGACCTCCTGAGAAGTGAGGTGGAAGAGAGTCAGAGAAAACTGCAAATAGTCTCAGATACCTTAAGCTTCTTCAAACAGGCATTTCAGGACAGAAGGGAACATCTCCATACTTACTTCAAGGAGGACTCTGAAGTCAGGGCATGGGATTTCCAAGCATCTCTGGTCTTTGTACGACTGGATGGCTTTCTGGGCCGACTACGCATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'5-5,'5-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.6=100)
A:
PF083857=DHC_N1=FE(12.0=100)
C2:
PF083857=DHC_N1=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGACCTGGAACACATTT
R:
ATCCCATGCCCTGACTTCAGA
Band lengths:
300-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]