HsaEX6021171 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11514967-11523098:+
Coord C1 exon
chr17:11514967-11515097
Coord A exon
chr17:11520728-11520939
Coord C2 exon
chr17:11522865-11523098
Length
212 bp
Sequences
Splice sites
3' ss Seq
CCATCTCCAATTCCTTCCAGCTC
3' ss Score
7.37
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTATGAAGATCTGAAATACATCTATAATCAACTGAGAACAATAACGGTGAGGGGCATGGCCAAGCTCCTGGACAAGCTTCAGAGTAGCTACTTTCCAGCTTTCAAAGCCATGTACAGAGATGTTGTTGCAG
Seq A exon
CTCTAGCAGAGGCACAGGACATCCATGTGCACCTGATACCGCTCCAGCGCCACCTGGAAGCTCTGGAGAATGCAGAATTTCCGGAGGTGAAGCCCCAGCTGCGGCCCCTGCTCCACGTGGTCTGTCTGATTTGGGCCACATGCAAGTCCTACCGCTCCCCGGGAAGGCTGACTGTGCTGCTCCAGGAGATTTGCAACCTTCTCATCCAGCAG
Seq C2 exon
GCCTCTAATTATCTCAGCCCAGAAGACCTGCTGAGAAGTGAGGTAGAAGAAAGTCAGAGAAAACTGCAAGTGGTCTCAGACACTTTGAGCTTCTTCAAGCAAGAGTTTCAGGACAGAAGGGAGAATCTCCACACTTACTTCAAAGAGAACCAGGAAGTCAAGGAATGGGATTTCCAGTCTTCTTTGGTCTTTGTGCGATTGGATGGCTTCCTGGGACAACTGCACGTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(47.9=71.4)
A:
PF083857=DHC_N1=FE(12.0=100)
C2:
PF083857=DHC_N1=FE(13.2=100)


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAACGGTGAGGGGCATG
R:
AGCCATCCAATCGCACAAAGA
Band lengths:
302-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)