BtaEX6087282 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30975641-30982989:+
Coord C1 exon
chr19:30975641-30975771
Coord A exon
chr19:30981432-30981643
Coord C2 exon
chr19:30982756-30982989
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTGTCTCCCGTTCCTTCCAGCTC
3' ss Score
10.65
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTGTGAAGATCTGGAATACATTTATAATCAGCTGAGAATGATAAAGAGGAGGGGCATGGTGGGACTTCTGGATAAGCTTCAGAGCAGCTACTTTCCAGCTTTCCAAGCCATGTTCCGAGACATTGGAGCAG
Seq A exon
CTCTGACGGAGGCGCGGGACATCTACACCCACCTGGCGCCACTGCGTCGTCACCTGGAGGACCTCGAGAGCCTGGAGTTTCCTGACGTGAAGCCCCGGCTGCGGCCCCTGCTGCACGTGGTCTGCCTGATCTGGGCCATGTGTGAGTCTTACCGCTGCCCAGGGCGGCTCACAGTGCTGCTGCAAGAGATCTGCAACCTTCTGGTCCAGCAG
Seq C2 exon
GCCTCTGTTTATCTCTGCCCAGAAGACCTCCTGAGAGGTGAGGTGGAGGAAAGTCAGAGGAAACTGCATGTGGTCGTGGACACCCTGAGCTTCTTCAAGCAGCTGTTTCAGGACAGAAGGGAGAATCTCCATTCTTACTTCAGAGAGAACCAGGAGGTCCGCGAGTGGGATTTCCAGTCCTCTTTGGTCTTTGTGCGACTGGATGGCTTCCTAGGGCGACTGGGCGTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.5=100)
A:
PF083857=DHC_N1=FE(12.0=100)
C2:
PF083857=DHC_N1=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGAGGAGGGGCATGGTGG
R:
CATCCAGTCGCACAAAGACCA
Band lengths:
295-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]