MmuEX0014953 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118179536-118189485:-
Coord C1 exon
chr12:118189386-118189485
Coord A exon
chr12:118186885-118187096
Coord C2 exon
chr12:118179536-118179769
Length
212 bp
Sequences
Splice sites
3' ss Seq
ATGGCTCTTCCCTTTTGCAGCTC
3' ss Score
10.68
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTTCAGGCTCCAATTGTCCTCAAGATGGTTAAGATACTGAGAACAAGACAAAGCAGCTATCTTCCTGCTCTGAAGGGCATCTTTACCACGGTAGAAAATG
Seq A exon
CTCTTCTTGAAGCCCAGGATGTGGAACTTCACCTAAGACCTCTGAGGAGGCACATTCACAGTCTCCAGGAGGCAGAATTCCCACAGACTAGAATACTGATTGCCCCATTGCTTCACACCATCTGTCTTATCTGGAGTCATTCCAAGTTTTATAACACCCCTGCTCGGGTTATAGTTTTACTGCAAGAGTTTTGTAACCTCTTCATTGACCAG
Seq C2 exon
GCAAGAGCATACCTGTCACCTGAAGATCTTCTGAAAGGAGAAATTGAAGACGCACTGGAAAAGGTGCAGGTGGCCATCAGTGTCTTAAAGACGTTCCAGAATTCTTTCTTCAAATATAGAAAGGGATTGACAAGCTATTTCACAAGAAACACGGAGCAGAGATCCTGGGATTTTCAGTCTCATCTGGTGTTTGGCAGATTTAACAAATTTCTTGACCGGCTGGTAAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'8-5,'8-4,9-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.7=100)
A:
PF083857=DHC_N1=FE(12.1=100)
C2:
PF083857=DHC_N1=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCTCCAATTGTCCTCAA
R:
TGCCAAACACCAGATGAGACTG
Band lengths:
294-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types