HsaEX0020118 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21600689-21609917:+
Coord C1 exon
chr7:21600689-21600788
Coord A exon
chr7:21603804-21604015
Coord C2 exon
chr7:21609687-21609917
Length
212 bp
Sequences
Splice sites
3' ss Seq
TGGTGGTTCTTTGCTTTCAGCTC
3' ss Score
8.35
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTTCAGGCACCTGTTGTCCTCAAAATGGTTAAGATCCTGACAACTAAACAAAGCAGCTATTTTCCTACTCTGAAGGACATTTTTCTGGCTGTGGAAAATG
Seq A exon
CTCTTCTCGAAGCCCAAGATGTGGAACTTTACCTGAGACCTCTGAGGAGACACATCCAGTGTCTCCAGGAGACGGAATTCCCACAGACACGCATATTAATCGCTCCATTATTTCATACCATCTGTCTGATCTGGAGTCATTCCAAGTTTTATAACACCCCAGCTCGGGTTATAGTTTTATTGCAAGAGTTTTGTAATCTCTTCATTAACCAG
Seq C2 exon
GCAACAGCTTACCTTTCACCTGAGGACCTTTTGAGGGGAGAAATAGAAGAGTCACTGGAAAAGGTGCAGGTGGCTGTTAACATCTTAAAGACTTTCAAAAACTCCTTTTTCAACTATAGAAAAAAATTGGCAAGCTACTTTATGGGAAGAAAGCTGAGACCATGGGATTTCCAGTCTCATCTGGTGTTTTGCAGATTTGACAAGTTTCTTGATCGTTTAATAAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.7=100)
A:
PF083857=DHC_N1=FE(12.1=100)
C2:
PF083857=DHC_N1=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGGCACCTGTTGTCCTC
R:
TCTGCAAAACACCAGATGAGACT
Band lengths:
295-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)