RnoEX6037788 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117707999-117708786:+
Coord C1 exon
chr8:117707999-117708031
Coord A exon
chr8:117708361-117708393
Coord C2 exon
chr8:117708733-117708786
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCTGTTTGTTTTCAGGGC
3' ss Score
12.83
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGAGAGCCTGGTCGCCCTGGGGATCCTGCATTG
Seq A exon
GGCCCTGGTGGTGCTGGAGCCAAGGGAGAAAAG
Seq C2 exon
GGAGATGCTGGGCTCCCTGGGCCCAGAGGAGCTTCTGGAATCAAAGGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'51-49,'51-48,52-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.4=100)
A:
PF0139113=Collagen=PD(1.6=9.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCTGGTCGCCCTG
R:
TGCTCTCCTTTGATTCCAGAAGC
Band lengths:
85-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]