RnoEX6038534 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9974777-9976736:+
Coord C1 exon
chr9:9974777-9974887
Coord A exon
chr9:9976324-9976424
Coord C2 exon
chr9:9976691-9976736
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTTCTCACCCCGCAGCTG
3' ss Score
11.45
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGGAACCTCACTGAGCTGGTGGTCGCTGTGACAGATGAAAACATCGTGGGGCTCTTCGCAGCGCTGCTAGCTGAGAGGAGGGTCTTGCTCACGGCCAGCAAGCTCAGCACT
Seq A exon
CTGACAGCCTGCGTTCACGCCTCCTGCGCTCTGCTCTACCCCATGCGCTGGGAGCATGTTTTGATCCCCACGCTGCCCCCGCACCTGCTGGATTACTGCTG
Seq C2 exon
TGCGCCCATGCCCTACCTCATAGGAGTCCACAGCAGTCTCGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'14-19,'14-18,15-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(17.7=100)
A:
PF0214116=DENN=FE(16.3=100)
C2:
PF0214116=DENN=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTCACTGAGCTGGTG
R:
CTCAGCGAGACTGCTGTGGA
Band lengths:
157-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]