RnoEX6045714 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101016376-101019009:+
Coord C1 exon
chr13:101016376-101016461
Coord A exon
chr13:101018063-101018137
Coord C2 exon
chr13:101018849-101019009
Length
75 bp
Sequences
Splice sites
3' ss Seq
CATTTTTCCCCCCTCCACAGTGC
3' ss Score
10.35
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGAATTTCCATGGCCGTCCAGAGAAGCTGATCAGGTTGAGGAACCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGTGATAA
Seq A exon
TGCACCTGAGTGGAATTACATAGATCCAAGGAGGAAGGAGGAGCTGGACAAGAAAGCAGAAGATGGCGAGTTCTG
Seq C2 exon
GATGTCCTTTTCGGATTTCTTGAAGCAGTACTCCCGACTGGAGATCTGCAACCTGTCCCCAGACTCTCTGAGCAGTGAAGAGATACACAAATGGAACCTAGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCTGCCTGAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'11-10,'11-9,12-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(92.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGTGAAGTGGAGTGGTC
R:
CTGTAGAACCCCGTGTCCAGC
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]