GgaEX6029118 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18836323-18839000:+
Coord C1 exon
chr3:18836323-18836408
Coord A exon
chr3:18837775-18837849
Coord C2 exon
chr3:18838840-18839000
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGCTTTGTCTGCAGTGC
3' ss Score
9.27
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTATTACCGAGGACGGCCAGAGAAACTTGTGAGGCTTAGAAATCCCTGGGGTGAAATAGAATGGACTGGAGCGTGGAGTGATAA
Seq A exon
TGCTCCCGAATGGAATTATATTGATCCCAAACAAAAGCAGGCTCTGGATAAGCAAGTAGATGATGGAGAATTTTG
Seq C2 exon
GATGGCGTTTTCTGATTTTCAAAGGCAGTTCACCCGTCTGGAGATCTGCAACCTGACTCCTGACACACTGACAAGCAATCAGGTCAACAAATGGGACCTGACCATGTTCAATGGACAGTGGATACGGGGTTCAACAGCTGGAGGTTGCCAGAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.0=100)
A:
PF0064816=Peptidase_C2=FE(8.3=100)
C2:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAATGGACTGGAGCGTGGA
R:
CAGCTGTTGAACCCCGTATCC
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]