GgaEX6029118 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17058883-17061560:+
Coord C1 exon
chr3:17058883-17058968
Coord A exon
chr3:17060335-17060409
Coord C2 exon
chr3:17061400-17061560
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTGCTTTGTCTGCAGTGC
3' ss Score
9.27
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTATTACCGAGGACGGCCAGAGAAACTTGTGAGGCTTAGAAATCCCTGGGGTGAAATAGAATGGACTGGAGCGTGGAGTGATAA
Seq A exon
TGCTCCCGAATGGAATTATATTGATCCCAAACAAAAGCAGGCTCTGGATAAGCAAGTAGATGATGGAGAATTTTG
Seq C2 exon
GATGGCGTTTTCTGATTTTCAAAGGCAGTTCACCCGTCTGGAGATCTGCAACCTGACTCCTGACACACTGACAAGCAATCAGGTCAACAAATGGGACCTGACCATGTTCAATGGACAGTGGATACGGGGTTCAACAGCTGGAGGTTGCCAGAACTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'10-11,'10-8,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=NA
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.0=100)
A:
PF0064816=Peptidase_C2=FE(8.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAATGGACTGGAGCGTGGA
R:
CAGCTGTTGAACCCCGTATCC
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]