DreEX6066287 @ danRer10
Exon Skipping
Gene
ENSDARG00000010758 | capn12
Description
calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
Coordinates
chr18:36708576-36711133:+
Coord C1 exon
chr18:36708576-36708661
Coord A exon
chr18:36708754-36708831
Coord C2 exon
chr18:36710958-36711133
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTGTGTGTATGCAGGTG
3' ss Score
9.52
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTCAAGAAGGCTTCTGAAGAGGTCTTTCTGCTGAGACTGCGTAACCCCTGGGGATTTGTTGAGTACTGCGGACCCTGGAGTGACAA
Seq A exon
GTGTAAAGACTGGGACTTCGTAGACAACACTGAGAAGACGAAACTTGAATTGGCCAAAGTTGAAGATGGAGAATTCTG
Seq C2 exon
GATTAGCATAGAGGACTTTTGCAGATTTTATAATACAGTGGAGATGTGCAGTGTGGATCCAGACTCTATGTCGGGGGAAGAGAGTGAAGATACAAGCACCTCGTCCTGGACACTGAGCTTACATCAGGGAACCTGGGTCCCAATGTGCTCTGCTGGCGGCAGCCGACGATACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010758-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.4=100)
A:
PF0064816=Peptidase_C2=FE(8.7=100)
C2:
PF0064816=Peptidase_C2=PD(6.4=31.7),PF0106717=Calpain_III=PU(15.7=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTTCTGCTGAGACTGCG
R:
TCCAGGACGAGGTGCTTGTAT
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]