RnoEX6051215 @ rn6
Exon Skipping
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4899128-4902175:-
Coord C1 exon
chr15:4901954-4902175
Coord A exon
chr15:4901169-4901338
Coord C2 exon
chr15:4899128-4899257
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCTTACCTTCCCACAAACAGGCA
3' ss Score
8.2
5' ss Seq
CATGTAAAC
5' ss Score
-0.59
Exon sequences
Seq C1 exon
AGCCCACCCAGAGGCCTCGGACAGTCTGTGAGCGCTGGAGGGAAAGCCTGCTGGAACACTACGGGGGCACACCCAGGGACGACCAGTATGTGCCCCAGTGTGACGACCTGGGCCACTTCATCCCCCTGCAGTGTCACGGGAAGAGTGATTTCTGTTGGTGTGTGGACAAGGATGGCAGAGAACTTCCAGGCACCCGCTCCCAGCCAGGCACCATGCCTGCAT
Seq A exon
GCATACCCACTGTCGCCCCACCCGTGGTCCGGCCCACACCCCGGCCTGATGTGACTCCTCCGGCTGTGGGCACCTTCCTGCTCTATGCCCAGGGCCAGCAGATCGGTCACTTGCCCCTCAATGGCAGCAGGCTTCAGAAGGATGCAGCCAGGACCCTGCTGTCACTACAT
Seq C2 exon
GGCTCCATAGTCGTGGGGATTGACTATGACTGCCGGGAGAGGATGGTCTACTGGACAGACGTTGCCGGGAGGACCATCAGCCGTGCCAGCTTGGAGGCAGGAGCCGAACCCGAGACCATCATTACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341-'30-25,'30-24,31-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.351 C2=0.023
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=88.0)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCTGCTGGAACACTACG
R:
GCAACGTCTGTCCAGTAGACC
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]