BtaEX6053097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021945 | NID2
Description
Bos taurus nidogen 2 (osteonidogen) (NID2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102065]
Coordinates
chr10:44899668-44902645:-
Coord C1 exon
chr10:44902424-44902645
Coord A exon
chr10:44901643-44901812
Coord C2 exon
chr10:44899668-44899797
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTTCCTCACCACAGGTA
3' ss Score
11.5
5' ss Seq
CATGTAAAG
5' ss Score
1
Exon sequences
Seq C1 exon
AGCCCACCCAGAGGCCCCGGACCGTCTGTGAGCGCTGGAGGGAAAGCCTGCTGGAGCACTACGGGGGCACCCCCAGGGACGACCAGTATGTGCCTCAGTGCGACGACCTGGGCCACTTCACCCCGCTGCAGTGCCATGGCAAGAGTGACTTCTGCTGGTGTGTCGACCAGGACGGCAGAGAGGTGCAGGGCACCCGCTCGCAGCCAGGCATCACCCCTGCAT
Seq A exon
GTATACCCACCGTGGCTCCACCCACGGTCCGGCCCACACCCCGGCCCGACGTGACCCCTCCACCAGTGGGCACCTTCCTGCTCTATGCCCAGGGCCAGCAGATTGGCCACTTGCCCCTCAATGGTACCAGGCTTCAGAAGGACATGGCCAAGACCCTGCTGTCGCTGCAT
Seq C2 exon
GGCTCCATAGTCGTGGGAATTGACTATGACTGCCGGGAGAGGATGGTGTACTGGACAGATGTTGCTGGACGGACAATTAGCCGCGCCAGTTTGGAACCAGGAGCAGAGCCCGAGATGGTCGTTAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021945-'28-19,'28-18,30-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.456 C2=0.205
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=88.0)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGTATGTGCCTCAGTGC
R:
CTGCTCCTGGTTCCAAACTGG
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]