DreEX0050604 @ danRer10
Exon Skipping
Gene
ENSDARG00000075707 | nid2a
Description
nidogen 2a (osteonidogen) [Source:ZFIN;Acc:ZDB-GENE-030827-2]
Coordinates
chr17:14800209-14802045:-
Coord C1 exon
chr17:14801815-14802045
Coord A exon
chr17:14800424-14800593
Coord C2 exon
chr17:14800209-14800338
Length
170 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTTCTATCATCAAGGTA
3' ss Score
5.5
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
TGATAGTTCCTCCAACGCAGCGTCCGGAGAGTGTCTGTGAGCGCTGGAGAGCAAGTCTGTTACAGCAGTATGGAGGTCAGCCAGATTCCCAGCATTATCTACCTCAGTGTGACTCTGCCGGTGAGTTCAACCCAGTTCAGTGTTATGGAGGCAGCAGCTACTGCTGGTGTGTGGACGCAAATGGACGAGAAGTACCAGGAACCCGCTCACATGATGCTGTGAAGCCTGCCT
Seq A exon
GTATACCTACTGTGGCCTCGCCTACGGTGCACCCTCTCCCACGCCCAGATGTGACTCCGCCTCCTACGGGCACGTCTCTTCTCTACGCCCAGGGCCAGCAGATTGGAGTTTTGCCTCTCAATGGCACACAGATGGATAAGGAGAGATCGTCAGTGCTGCTCGCTTTACAT
Seq C2 exon
GGCTCGATAGTGGTTGGCATTGATTACGACTGCAGAGAAAGGAAAGTATACTGGACAGATCTGGCAGGACGGACAATCAATCGAGCCAGCCTGGATCCAGGATCAGAACCAGAGATCATCATCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075707-'24-33,'24-32,27-33
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.447 C2=0.114
Domain overlap (PFAM):
C1:
PF0301610=Exostosin=FE(67.0=100),PF0008613=Thyroglobulin_1=PU(97.0=82.1)
A:
PF0301610=Exostosin=PD(18.3=36.2),PF0008613=Thyroglobulin_1=PD(1.5=1.7)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCAGATTCCCAGCATT
R:
CAGGCTGGCTCGATTGATTGT
Band lengths:
249-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]