GgaEX1039687 @ galGal4
Exon Skipping
Gene
ENSGALG00000012394 | NID2
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr5:57992625-57993772:-
Coord C1 exon
chr5:57993548-57993772
Coord A exon
chr5:57993287-57993456
Coord C2 exon
chr5:57992625-57992754
Length
170 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCATGGTGTGCCCAGGTC
3' ss Score
7.1
5' ss Seq
CATGTAAAG
5' ss Score
1
Exon sequences
Seq C1 exon
CAGAGCCCTCGGAGCGTCCCCCGACCATGTGTGAGCGCTGGCGGCAGAGCCTGCTGGAGCACTACGGAGGCAGCCCCCGTGGCGACCAGTACGTGCCGCAGTGTGATGCACACGGCCACTTCACCCCGCTGCAGTGCCACGGGGACAGCGGGTACTGCTGGTGCGTGGACGAGAGCGGCAGGGAGATCCAAGGCACGCGCTCGGAGCCCGGCAGCCCCCCGCCAT
Seq A exon
GTCTCCCCAGCGTCGCACCGCCCACCGTCCGGCCCTCGCCGCGTCCCGACGTGTCCCCGCCGGCCGCAGGGACCTTCCTGCTGTACGCCCAGGGCCAGCAGATCGGCTACCTGCCACTCAACGGCACGCGGCTGCAGAAGGAGGCAGCCAAGACCCTGCTCTCCCTGCAT
Seq C2 exon
GGCTCCATCGTGGTAGGGATTGATTACGACTGCCGGGAGAAGACAATCTATTGGACTGACGTGGCGGGCCGAACCATCAGCAGGGCAAGCCTGGAGCCAGGCGCTGAGCCAGAGACCATTATCAACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394-'20-27,'20-25,21-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=0.386 C2=0.205
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=86.8)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCGACCATGTGTGAG
R:
TCTTCTCCCGGCAGTCGTAAT
Band lengths:
252-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]