HsaEX6071317 @ hg19
Exon Skipping
Gene
ENSG00000087303 | NID2
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:13389]
Coordinates
chr14:52478272-52481993:-
Coord C1 exon
chr14:52481772-52481993
Coord A exon
chr14:52481005-52481174
Coord C2 exon
chr14:52478272-52478401
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCTCTCTCCCACAGGTA
3' ss Score
13.04
5' ss Seq
CATGTAAAG
5' ss Score
1
Exon sequences
Seq C1 exon
AGCCCACCCAGAGGCCCCCGACCATCTGTGAGCGCTGGAGGGAAAACCTGCTGGAGCACTACGGTGGCACCCCCCGGGATGACCAGTACGTGCCCCAGTGCGATGACCTGGGCCACTTCATCCCCCTGCAGTGCCACGGAAAGAGCGACTTCTGCTGGTGTGTGGACAAAGATGGCAGAGAGGTGCAGGGCACCCGCTCCCAGCCAGGCACCACCCCTGCGT
Seq A exon
GTATACCCACCGTCGCTCCACCCATGGTCCGGCCCACGCCCCGGCCAGATGTGACCCCTCCATCTGTGGGCACCTTCCTGCTCTATACTCAGGGCCAGCAGATTGGCTACTTACCCCTCAATGGCACCAGGCTTCAGAAGGATGCAGCTAAGACCCTGCTGTCTCTGCAT
Seq C2 exon
GGCTCCATAATCGTGGGAATTGATTACGACTGCCGGGAGAGGATGGTGTACTGGACAGATGTTGCTGGACGGACAATCAGCCGTGCTGGTCTGGAACTGGGAGCAGAGCCTGAGACGATCGTGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303-'24-27,'24-24,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.362 C2=0.023
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=PU(97.0=85.3)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCTGGGCCACTTCATC
R:
TTCACGATCGTCTCAGGCTCT
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)