MmuEX6039741 @ mm9
Exon Skipping
Gene
ENSMUSG00000021806 | Nid2
Description
nidogen 2 [Source:MGI Symbol;Acc:MGI:1298229]
Coordinates
chr14:20621560-20624649:+
Coord C1 exon
chr14:20621560-20621781
Coord A exon
chr14:20622271-20622440
Coord C2 exon
chr14:20624520-20624649
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTCCACCTTCCCACAAACAGGCA
3' ss Score
7.46
5' ss Seq
CATGTAAAC
5' ss Score
-0.59
Exon sequences
Seq C1 exon
AGCCCACCCAGAGGCCTCGGACTGTCTGTGAGCGTTGGCGGGAAAGCCTGCTGGAACACTACGGAGGCACACCCAGGGATGACCAGTATGTGCCCCAGTGTGATGACCTGGGCCACTTCATCCCCCTGCAGTGCCATGGAAAGAGTGATTTCTGTTGGTGTGTGGACAAGGATGGCAGAGAGCTACAGGGCACGCGCTCACAGCCAGGCACCAGGCCTGCAT
Seq A exon
GCATACCCACCGTCGCTCCACCCGTGGTCCGGCCCACACCCCGGCCCGATGTGACTCCTCCATCTGTGGGCACCTTCCTGCTCTATGCCCAGGGCCAACAGATTGGCCACTTGCCCCTCAATGGCAGCAGGCTTCAGAAGGACGCAGCCCGGACCCTGCTGTCACTGCAT
Seq C2 exon
GGCTCCATAGTTGTGGGGATTGACTATGACTGCCGGGAGAGGATGGTCTACTGGACAGACGTTGCTGGTCGGACCATCAGCCGTGCCAGCTTGGAGGCAGGAGCCGAACCCGAGACCATCATTACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021806-'16-19,'16-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.421 C2=0.023
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=88.0)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCTGCTGGAACACTACG
R:
CCAGCAACGTCTGTCCAGTAG
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: