DreEX6044097 @ danRer10
Exon Skipping
Gene
ENSDARG00000009471 | nid2b
Description
nidogen 2b (osteonidogen) [Source:ZFIN;Acc:ZDB-GENE-040724-143]
Coordinates
chr20:9662370-9664010:-
Coord C1 exon
chr20:9663786-9664010
Coord A exon
chr20:9662587-9662756
Coord C2 exon
chr20:9662370-9662499
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTTCACCTGTCAGGTA
3' ss Score
9.56
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
CTGCTCTGGTTCCCCGTGTGGAGACTGTGTGTGAGCGTTGGAGGCTTGCACTCATGAGTCACTATAATGGTCAGCCGTCCTCTCAGGACTACATGCCCCTCTGTGACGCTCACGGAAATTTCCAGCCTGTGCAATGTTATGGCAACAGCGCTTTCTGCTGGTGTGTGGACCGACATGGTGTTGAAATTATTGGAACCCGGTCCAACGAGGATGTAAAGCCCCCCT
Seq A exon
GTATATCTGGTGATGCCGCCCCACTCAACAATGCACTGATGTATCCGGTTATAAGCTCCTCCCCTTCAGGCCCTGCTATACTTTACACACAAGCCTCACAGATTGGAGTCATTCCACTTGAAGAAACAGACCCAGTTCAGGAAAAGTCCACTGTGTTATTAGCCTTACAG
Seq C2 exon
GACTCGGTTGTGATTGGAATTGACTATGACTGTCAGGAGAACATCTTGTATTGGACAGATTTTGGACGACATACAATTTACAGAGCAGTTCTAATATCTGGGTCTGAACCAGAGGCTGTTATCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009471-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=86.8)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTACATGCCCCTCTGTGA
R:
GCCTCTGGTTCAGACCCAGAT
Band lengths:
256-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]