MmuEX6039741 @ mm10
Exon Skipping
Gene
ENSMUSG00000021806 | Nid2
Description
nidogen 2 [Source:MGI Symbol;Acc:MGI:1298229]
Coordinates
chr14:19802338-19805427:+
Coord C1 exon
chr14:19802338-19802559
Coord A exon
chr14:19803049-19803214
Coord C2 exon
chr14:19805298-19805427
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTCCACCTTCCCACAAACAGGCA
3' ss Score
7.46
5' ss Seq
ACTGCATGT
5' ss Score
-2.57
Exon sequences
Seq C1 exon
AGCCCACCCAGAGGCCTCGGACTGTCTGTGAGCGTTGGCGGGAAAGCCTGCTGGAACACTACGGAGGCACACCCAGGGATGACCAGTATGTGCCCCAGTGTGATGACCTGGGCCACTTCATCCCCCTGCAGTGCCATGGAAAGAGTGATTTCTGTTGGTGTGTGGACAAGGATGGCAGAGAGCTACAGGGCACGCGCTCACAGCCAGGCACCAGGCCTGCAT
Seq A exon
GCATACCCACCGTCGCTCCACCCGTGGTCCGGCCCACACCCCGGCCCGATGTGACTCCTCCATCTGTGGGCACCTTCCTGCTCTATGCCCAGGGCCAACAGATTGGCCACTTGCCCCTCAATGGCAGCAGGCTTCAGAAGGACGCAGCCCGGACCCTGCTGTCACT
Seq C2 exon
GGCTCCATAGTTGTGGGGATTGACTATGACTGCCGGGAGAGGATGGTCTACTGGACAGACGTTGCTGGTCGGACCATCAGCCGTGCCAGCTTGGAGGCAGGAGCCGAACCCGAGACCATCATTACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021806-'21-23,'21-22,22-23
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=0.421 C2=0.023
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=88.0)
A:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=PU(71.4=68.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCTGCTGGAACACTACG
R:
CCAGCAACGTCTGTCCAGTAG
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types