RnoEX6052041 @ rn6
Exon Skipping
Gene
ENSRNOG00000017424 | Chrna2
Description
cholinergic receptor nicotinic alpha 2 subunit [Source:RGD Symbol;Acc:621533]
Coordinates
chr15:42817821-42823817:+
Coord C1 exon
chr15:42817821-42817865
Coord A exon
chr15:42820331-42820440
Coord C2 exon
chr15:42822788-42823817
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATGACCACTCCCCTAAGCAGGAA
3' ss Score
4.78
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GATGAGAAGAATCAAATGATGACCACCAATGTCTGGCTAAAGCAG
Seq A exon
GAATGGAATGACTACAAGCTGCGCTGGGACCCGGCTGAGTTTGGCAATGTCACCTCCCTGCGCGTCCCTTCAGAGATGATCTGGATCCCAGACATTGTCCTCTACAACAA
Seq C2 exon
TGCAGATGGGGAGTTTGCGGTGACCCACATGACCAAGGCTCACCTCTTCTTCACGGGCACTGTGCACTGGGTGCCCCCAGCCATCTACAAGAGCTCCTGCAGCATCGATGTGACCTTCTTCCCCTTCGACCAGCAGAACTGCAAGATGAAGTTTGGCTCCTGGACATATGACAAGGCCAAGATCGATCTGGAGCAGATGGAGAGGACAGTGGACCTGAAGGACTACTGGGAGAGTGGCGAGTGGGCCATTATCAATGCCACCGGAACCTATAACAGTAAGAAGTACGACTGCTGCGCGGAGATCTACCCCGATGTCACCTACTACTTTGTGATCCGCCGGCTGCCGCTGTTCTATACCATCAACCTCATCATCCCATGCCTGCTCATCTCCTGCCTCACTGTGCTCGTGTTCTACCTGCCTTCCGAGTGTGGAGAGAAGATCACGCTGTGCATCTCGGTGCTGCTATCTCTCACTGTCTTCCTGCTGCTCATCACGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017424-'4-5,'4-3,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.084
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=33.4),PF103294=DUF2417=WD(100=50.0),PF0293211=Neur_chan_memb=PU(87.0=64.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATGATGACCACCAATGTCTG
R:
ACTGTCCTCTCCATCTGCTCC
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]