RnoEX6054370 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89136100-89153276:+
Coord C1 exon
chr17:89136100-89136991
Coord A exon
chr17:89138479-89138623
Coord C2 exon
chr17:89153170-89153276
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGATATGTGGTCTTTTTTAGATA
3' ss Score
10.29
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CAACATGGGAAAAGCCAAGCTGCCCAGGACTGTGGCTGACAGAGGAGATTTACCTGAGGAAAACTTTGGATCCTAGTCTTAGCCAAAAGTCAGTCTATCAAAATGCAAACAGCAATGAAAAAGAAAAGAAAACATCAGTGGTTACCCAGAGTGCACCGCTGGGCAACCTAGGGAAAGACTATCACCTGCATGGGTTCCTTGGAGAAAAAGACACTGGACCAGTGGACCAGGCCCAGGAGGAAGACAAGGCTGCTGTGTTCATTCAGAGCAAATACCGGAATTCCAAGCAAAAGCAACAGCTGGGAAAGGACAATCTGTCCCCTCCCTTTAAGAATGAAAAGATCCTTTCATCACCCACAGAAGTAGCAAGAAACACTCGCAATGTTTATTCCTGTCCGACCAAGCAGGAGGGGATCCATCATCTCAAGATGGTGGATGAAAGAGAGTCAAAACTGACTTCCAAAAAAGAAGCATGCGATTTGGCAATGTTTTCAAGACAG
Seq A exon
ATATCAAAGTTATCTGAAGAATATTTCATTCTGCAGAAAAACTTGAACGAAATTATTTTGGCCCAGCAACTGAAGCCACTTTATCTGGGTATCTGTCGACATAAACCTATCAACAGACACATTTCTACTCATCAATACCTCTCAG
Seq C2 exon
GTGTCTCTAAAGGAGAAGAGTCAAAAATATTGAGACCTCCAAGACGACCTCGGAAACCTAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'32-35,'32-34,33-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.122 C2=0.722
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACAGCTGGGAAAGGACAA
R:
AGGTCGTCTTGGAGGTCTCAA
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]