MmuEX6099207 @ mm9
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22432861-22455708:+
Coord C1 exon
chr2:22432861-22433749
Coord A exon
chr2:22435233-22435377
Coord C2 exon
chr2:22455602-22455708
Length
145 bp
Sequences
Splice sites
3' ss Seq
GGCCTTTTTTTTTTTTTTAGATA
3' ss Score
10.32
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGAATCTTTTGTGAAGAAACAGACAGAAAACGCAGTGCCTACTAATGAATCCAACACTTCAACTCCAAACAACAAAGAGAGCCCATCTGCTGGGAAGACAGCTCCCTTCAGAGCAGAGTCAAAGGCCACCAATGTTGAGAGTAACAACAGAAGATACCATACTCAGAAGAAAATGAGCAATGTGTATGCAGAAGGACAGAATCAAGAGCTATATATTGTGGAGGACACTTGGGCAGAAGTAAGCCCCAGGCAGAAGTATGTGCAAGACCTGGAAGAAAGCAGAAAGATGAGGAAAGAGGAGAAAGGAGATGCTGTGATCCAGAGTTACTGTCAGTGGTACACAGAGGGAAGCAACTTTGAAGAATCAAAAGCAACATGTCTAGAAGGAAGGGAGACATGGGAAAGGACAAGCTGCCCAGGGCTGTGGCTGACTGAGGAGATTTACCTGAGAAAAACTTTGGATCCTACTCTTAGCCAAAAGTCAGTCTATCAAAATGCAGATGGCAAAGAAAAAGAACATAAAGTATCTGTGGTTACCCAGAATGCACCGCTGGGCAACCTGGAGAGAGACTATCACTTGCTAGGGTTCCTTGGAGAAGAAGACACTGGACCAGTGCCTCAGGCCCAGGAAGAACACAAGGCTGTGTCCATTCATAGCAAATACCAGAGTTCCAAGAAAAAGCAACAGCTGGGAAAGGACAGGCTGGCACCTCCCTTTAAGAATCAAAAGATCCTTTCATCGTCCACAGAAGTAGCAAAAACCACTCACAATGTCTATCCCTGTCCGACAAAGCAGGAGGGAGTCCATCATAGCAAGATGGTGGATGAGAGAGACTCAAAAATGGCTTCAAAAAAAGAAGCGTGGGATTTAGCAATGTTTTCAAGACAG
Seq A exon
ATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAG
Seq C2 exon
GTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'33-32,'33-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=0.122 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAACAGCTGGGAAAGGAC
R:
ATCGCAATTCCTACCGGTGTC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: