BtaEX6064139 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26905895-26919072:+
Coord C1 exon
chr13:26905895-26906813
Coord A exon
chr13:26909661-26909805
Coord C2 exon
chr13:26918966-26919072
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGCCTGACCTTCTTTTTTAGGTC
3' ss Score
12.4
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTACCCAGGACTTTGGTCAGCAGACAAGAAGACTCCAGGTCCTAACAAGCCTTCTTGCAAAAAGACATTAGACCCTTGTCTCAGCGAGAGGTCGGTTTGTCAAAATGAAAATAGCAAGGACAAAGAAAAGAAGACATCTGTGATCACCCAGAACACACCTGTATGCAGCCGTCAGAGGAGCCATCTGAGCCACGGGGCGGTCCAGGAGAGGCAGGTGAAACCAGCCATGCAAGCCCAGGAAGAAGACAGAGCCGCGGTGTTCATTCAGAGGAAATACCGGGGCTACAAGAGGAGGCAGCAATTACGGAAGGACAGGATGTCTTCTTTTAGAAATCCAAAGGTCGTTACAACACCGACAGAAGTAGCAAGAAATACTCTCAGTTTGTATTCCTACCCCACAAAACTTGAGGACTCCTGTAACATCGGGATGAAGAGTTATAAAGATGCAAAAGCAATTTCAGAAAAAGAAGCGTGTGACTTGGCAATTTTTTCAAGACAG
Seq A exon
GTCTCAAAGCTATCTGAAGAATATTTCATTCTGCAGAAAAAACTGAATGAAATGATCTTGTCACAGCAACTGAAGCCTCTTTATTTTGGAGTCTATCCTCATAAGCCAATTACTAGACGAGTGTCTTCTCATCAGTGCATCTCAG
Seq C2 exon
GTATCTCAAAAGGAGAGGAGCCAAAAATATTGAGACCCCCAAGGCGGCCCCGAAAACCCAAAACACTAAATAACTCTGAAGACTCCACATACTATTCTCTGCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123-'28-35,'28-34,29-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.041 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAATTACGGAAGGACA
R:
CGCCTTGGGGGTCTCAATATT
Band lengths:
252-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]