GgaEX6018656 @ galGal3
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16217959-16225254:-
Coord C1 exon
chr2:16224964-16225254
Coord A exon
chr2:16224166-16224304
Coord C2 exon
chr2:16217959-16218068
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTATATCTTTCAGATA
3' ss Score
11.26
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAAGCTGAAGCAGAAAAACAGAGTTTAGAGGACAAAGAGAAGGCAGCAGTGGTTATTCAGAGCAGTTACCGCGGTTACAGAAGGAGAGGACAACTCAGAAAAGAAGGGAAATTACCTTGCAAAAGTCAAGAGAACACTGCAAAGGAGTCAACAGAAGCAGTACACATTCAAAATAAAGATCCCCAAACAAAAAAAAATAAGGAAAGCAATGTGACAGAGGCTGAGAGCTCTAAGACACTGAAGGGAGGATCTGAAAAAGAGACCTGTGATTTGGCAGCCTTTTCACGGCAG
Seq A exon
ATATCAAAATTATCTGAAGACTACTTAGCATTGCAGCAAAAATTAAATGAAATGATACTGTCGCATCAGCTGAGACCTGTGATGATGTCCAAAGATAAGCAAACTAACAACCAACATTCTTCTCATGTTTGTCAGTCAG
Seq C2 exon
TTGCAGCCAAAGTAGAAGACACTCGCCCACTGCAAAGACCCCCAAGGAGGCCACGGAAGCCCAAGACATTAAATAACCCTGAAGATTCCACCTACTACACTCTAATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.928 A=0.638 C2=1.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=17.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCGGTTACAGAAGGAGA
R:
AGTGGGCGAGTGTCTTCTACT
Band lengths:
256-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]