DreEX6093878 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6141762-6147877:-
Coord C1 exon
chr24:6146761-6147877
Coord A exon
chr24:6144677-6144821
Coord C2 exon
chr24:6141762-6141853
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTGTAACCTGTCTAGGTA
3' ss Score
8.06
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GCAACTTCCGTGGCCACAAAGAAAGGAAAAGACTCCAAGAGGAAGGGAAAATCCCAAAGAAAAAGACTAAAGAGGAAATGGATGATCCAGGAGCTTCAGAACCAGACATTGCCATTGAGGAGCTTCCACCGCCTCCTTTAGAACTTGAACATGATCAAGAGCTAGACTCTAGTCCATCAGGAGGAGATGAGGAACACGCTGCAACTGTTTTACAAAGCAATTTCAGAGGACACCGGGAGAGAAAGAGACTGAGAGCTGAGAAAGAAGAGGCAACAGGAGGAGGGCAAAGCACTGGAGATGTGGAGGAGCAGGAGAACAATGACGTTCTAGACATTACAGATGTTCAGCTGGAACGAAGGGAAGAAGAGGAGGAAGGACAATACGATGAGGAGCAGGCAGCCATTAAAATCCAGAGCAATTTTAGAGGCTATAAAGACCGAAAGAACCTGAAAGCTACATCTCAAAAACAAGATGAGGAAGTGGAGTCACTCTTCAAACAG
Seq A exon
GTATCCAAGGCCTCTGAAGACTACCTTTCCCTTCAGAAGAAGTTAAATGAAATCATCCTCGCCCATCAGCTTAACCCCAGCAAAAATGGCATGTTTGTGAAAGGACAACCCATGAATGGCTACATGGGCTACTACCAGCCACCAG
Seq C2 exon
CTGACACAAAGCAGTCTCGAACACCACGCCGCGCACAACAACCCAAGACCCTGAACACGCCGGAGGACTCCACATACTACACACTTATTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'39-35,'39-34,40-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.633 C2=1.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6),PF0061222=IQ=WD(100=5.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGCACTGGAGATGTGGA
R:
CGTGGTGTTCGAGACTGCTTT
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]