GgaEX6018656 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16188771-16196754:-
Coord C1 exon
chr2:16195776-16196754
Coord A exon
chr2:16194978-16195116
Coord C2 exon
chr2:16188771-16188880
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTATATCTTTCAGATA
3' ss Score
11.26
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CATCTGTCAAAATCACAGCTGAACCTGGTCCCCAGCAGGAGCAAGCTAACCAAGACACACTGAGTGCAGATGGGCAAAATCAAGAATCTGCTGTGGTCCAGCCTGAGACAAACAAGGACGTGGAAAGAAACCATCTGAAACGTGAAGAAATGATACCTAGAGGATGTAAAGGAATTGTGAGAAAAGAGTCACTAAGAGGTTCACGGAAGCAAGCTGAAGCAGAAAAACAGAGTTTAGAGGACAAAGAGAAGGCAGCAGTGGTTATTCAGAGCAGTTACCGCGGTTACAGAAGGAGAGGACAACTCAGAAAAGAAGGGAAATTACCTTGCAAAAGTCAAGAGAACACTGCAAAGGAGTCAACAGAAGCAGTACACATTCAAAATAAAGATCCCCAAACAAAAAAAAATAAGGAAAGCAATGTGACAGAGGCTGAGAGCTCTAAGACACTGAAGGGAGGATCTGAAAAAGAGACCTGTGATTTGGCAGCCTTTTCACGGCAG
Seq A exon
ATATCAAAATTATCTGAAGACTACTTAGCATTGCAGCAAAAATTAAATGAAATGATACTGTCGCATCAGCTGAGACCTGTGATGATGTCCAAAGATAAGCAAACTAACAACCAACATTCTTCTCATGTTTGTCAGTCAG
Seq C2 exon
TTGCAGCCAAAGTAGAAGACACTCGCCCACTGCAAAGACCCCCAAGGAGGCCACGGAAGCCCAAGACATTAAATAACCCTGAAGATTCCACCTACTACACTCTAATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'33-36,'33-34,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=0.596 C2=0.919
Domain overlap (PFAM):
C1:
PF0061222=IQ=WD(100=6.4),PF0061222=IQ=WD(100=5.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCGGTTACAGAAGGAGA
R:
AGTGGGCGAGTGTCTTCTACT
Band lengths:
256-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]