RnoEX6055782 @ rn6
Exon Skipping
Gene
ENSRNOG00000012218 | Poteg
Description
POTE ankyrin domain family, member G [Source:RGD Symbol;Acc:1359470]
Coordinates
chr16:68822567-68827504:-
Coord C1 exon
chr16:68827398-68827504
Coord A exon
chr16:68825135-68825272
Coord C2 exon
chr16:68822567-68822625
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTATGTATCTGCTGTTTTAGAAA
3' ss Score
7.77
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GATGGCTTCACACCACTGCTGCTGGCACTCAGAGAGAAGAGGGTGGAGGTAGCAGAGCTTTTAGTAAGAATGGGAGCCGATGTCCATGTTGTAGATGAACTGCAAAG
Seq A exon
AAACACCCTGATATACGCTATAAGATGTGGGTCAAAAGGTCTGGCTGTATCACTCCTCAAGAAAGGTATCGATTTCTTCTACAAGGATGTCTTCGGATGGACGGCCCTGCGCTACGCTATCGAGGGCCACTGTACTTT
Seq C2 exon
TAGACAGACGCTTCTGGATTTTGAGGAAAATCTACACAGCAGAAAAGAAAACGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012218-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCTTCACACCACTGCTG
R:
GGTTCGTTTTCTTTTCTGCTGTGT
Band lengths:
164-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]